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ONTOLOGY REPORT - ANNOTATIONS

Term:mRNA splicing, via spliceosome
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Accession:GO:0000398 term browser browse the term
Definition:The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
Comment:Note that although the many U12-type introns have the sequence AT-AC at the intron termini, some introns with these terminal sequences are spliced by the U2-type spliceosome. The distinguishing characteristics are sequences near the 5' splice site and the branch point sequences of the intron. Note that although the majority of U2-type introns have the sequence GU-AG at the intron termini, some introns with these terminal sequences are spliced by the U12-type spliceosome. The distinguishing characteristics are sequences near the 5' splice site and the branch point sequences of the intron.
Synonyms:exact_synonym: nuclear mRNA splicing, via spliceosome
 narrow_synonym: nuclear mRNA splicing via U12-type spliceosome;   nuclear mRNA splicing via U2-type spliceosome
 broad_synonym: mRNA splicing;   pre-mRNA splicing
 related_synonym: splicing AT-AC intron;   splicing GT-AG intron
 alt_id: GO:0006374;   GO:0006375

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mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AQR aquarius intron-binding spliceosomal factor involved_in IEA UniProt
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chr26:47,927,167...48,036,764
Ensembl chr26:47,927,137...48,036,478 		JBrowse link
G BCAS2 BCAS2 pre-mRNA processing factor involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chr20:19,084,908...19,099,204
Ensembl chr20:19,084,954...19,099,590 		JBrowse link
G BUD13 BUD13 homolog involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:108,113,883...108,139,344
Ensembl chr 1:108,114,197...108,138,465 		JBrowse link
G BUD31 BUD31 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr28:13,734,417...13,750,749
Ensembl chr28:13,733,391...13,749,692 		JBrowse link
G CACTIN cactin, spliceosome C complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:3,369,445...3,386,684
Ensembl chr 6:3,369,279...3,383,226 		JBrowse link
G CASC3 CASC3 exon junction complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:66,001,923...66,037,025
Ensembl chr16:66,000,434...66,037,093 		JBrowse link
G CDC40 cell division cycle 40 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr13:63,666,294...63,718,628
Ensembl chr13:63,666,294...63,718,521 		JBrowse link
G CDC5L cell division cycle 5 like involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr17:27,727,185...27,785,233
Ensembl chr17:27,722,819...27,785,268 		JBrowse link
G CENATAC centrosomal AT-AC splicing factor involved_in ISO (PMID:34009673) UniProt PMID:34009673 NCBI chr 1:110,371,873...110,386,921 JBrowse link
G CRNKL1 crooked neck pre-mRNA splicing factor 1 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:49,052,304...49,070,600
Ensembl chr 2:49,054,125...49,070,576 		JBrowse link
G CUNH9orf78 chromosome unknown C9orf78 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:8,300,869...8,309,620
Ensembl chr12:8,301,195...8,309,900 		JBrowse link
G CWC15 CWC15 spliceosome associated protein homolog involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 1:86,180,225...86,190,445
Ensembl chr 1:86,179,366...86,190,439 		JBrowse link
G CWC22 CWC22 spliceosome associated protein homolog involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr10:65,464,537...65,527,530
Ensembl chr10:65,463,390...65,527,520 		JBrowse link
G CWC25 CWC25 spliceosome associated protein homolog involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:67,357,118...67,389,809
Ensembl chr16:67,357,125...67,391,550 		JBrowse link
G CWF19L1 CWF19 like cell cycle control factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:93,266,730...93,301,095
Ensembl chr 9:93,266,799...93,295,320 		JBrowse link
G CWF19L2 CWF19 like cell cycle control factor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:98,749,892...98,885,698
Ensembl chr 1:98,766,109...98,885,671 		JBrowse link
G DBR1 debranching RNA lariats 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10982890) Ensembl
MGI
TreeGrafter		 PMID:10982890 GO_REF:0000107 GO_REF:0000118 NCBI chr15:52,367,197...52,381,076
Ensembl chr15:52,367,357...52,380,227 		JBrowse link
G DDX23 DEAD-box helicase 23 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:45,071,884...45,092,287
Ensembl chr11:45,071,611...45,092,646 		JBrowse link
G DDX39A DExD-box helicase 39A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:13,054,803...13,065,154
Ensembl chr 6:13,052,105...13,065,153 		JBrowse link
G DDX39B DExD-box helicase 39B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:40,445,258...40,457,379
Ensembl chr17:40,447,061...40,456,826 		JBrowse link
G DDX41 DEAD-box helicase 41 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr23:79,522,265...79,528,628
Ensembl chr23:79,522,479...79,527,570 		JBrowse link
G DDX46 DEAD-box helicase 46 involved_in ISO (PMID:32494006), (PMID:34822310), (PMID:36797247) UniProt PMID:32494006 PMID:34822310 PMID:36797247 NCBI chr23:37,547,227...37,613,632 JBrowse link
G DHX16 DEAH-box helicase 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:41,780,965...41,801,310
Ensembl chr17:41,780,987...41,801,219 		JBrowse link
G DHX38 DEAH-box helicase 38 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:55,243,934...55,264,084
Ensembl chr 5:55,243,911...55,263,706 		JBrowse link
G DHX8 DEAH-box helicase 8 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr16:62,887,115...62,925,119
Ensembl chr16:62,887,594...62,925,061 		JBrowse link
G EFTUD2 elongation factor Tu GTP binding domain containing 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:61,505,796...61,549,720
Ensembl chr16:61,505,825...61,551,890 		JBrowse link
G EIF4A3 eukaryotic translation initiation factor 4A3 involved_in ISO (PMID:29301961) UniProt PMID:29301961 NCBI chr16:72,097,692...72,113,112 JBrowse link
G ESS2 ess-2 splicing factor homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:6,604,275...6,615,316
Ensembl chr19:6,604,345...6,615,055 		JBrowse link
G GCFC2 GC-rich sequence DNA-binding factor 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr14:31,524,958...31,571,978
Ensembl chr14:31,525,483...31,573,928 		JBrowse link
G GPKOW G-patch domain and KOW motifs involved_in IEA Ensembl
TreeGrafter
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:46,212,415...46,227,315
Ensembl chr  X:46,209,373...46,227,250 		JBrowse link
G HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:40,433,429...40,436,188
Ensembl chr23:40,435,002...40,435,913 		JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:50,397,173...50,403,192
Ensembl chr11:50,396,888...50,400,802 		JBrowse link
G HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1 like 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:29,547,847...29,549,047
Ensembl chr 3:29,548,013...29,548,972 		JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:32,167,126...32,178,031
Ensembl chr21:32,167,337...32,176,980 		JBrowse link
G HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:62,772,741...62,780,695
Ensembl chr10:62,772,806...62,778,972 		JBrowse link
G HNRNPC heterogeneous nuclear ribonucleoprotein C involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:21,677,871...21,737,607
Ensembl chr29:21,678,559...21,731,430 		JBrowse link
G HTATSF1 HIV-1 Tat specific factor 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr  X:111,498,102...111,513,959
Ensembl chr  X:111,498,634...111,514,749 		JBrowse link
G IK IK cytokine involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr23:43,280,876...43,295,844
Ensembl chr23:43,280,981...43,297,843 		JBrowse link
G ISY1 ISY1 splicing factor homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:51,905,564...51,940,705
Ensembl chr22:51,907,290...51,938,847 		JBrowse link
G LOC103216281 protein FRA10AC1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:86,888,087...86,943,547
Ensembl chr 9:86,908,908...86,941,891 		JBrowse link
G LOC103219520 splicing factor U2AF 35 kDa subunit-like protein involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 2:86,949,910...86,964,655
Ensembl chr 2:86,950,056...86,964,579 		JBrowse link
G LOC103221037 heterogeneous nuclear ribonucleoprotein A1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:80,850...82,007 JBrowse link
G LOC103221207 CWF19-like protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:9,907,782...9,909,518 JBrowse link
G LOC103225917 heterogeneous nuclear ribonucleoprotein A1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:74,858,088...74,928,834 JBrowse link
G LOC103226177 WD40 repeat-containing protein SMU1 involved_in IEA InterPro GO_REF:0000002 NCBI chr21:18,125,491...18,127,945 JBrowse link
G LOC103227227 U6 snRNA-associated Sm-like protein LSm3 involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr21:119,006,300...119,006,824 JBrowse link
G LOC103227326 heterogeneous nuclear ribonucleoprotein A3-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:127,155,021...127,156,812 JBrowse link
G LOC103235629 heterogeneous nuclear ribonucleoproteins A2/B1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:9,610,008...9,611,665 JBrowse link
G LOC103244060 small nuclear ribonucleoprotein E involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:10,300,066...10,300,572 JBrowse link
G LOC103244317 NHP2-like protein 1 involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr23:13,631,584...13,632,034 JBrowse link
G LOC103244341 putative U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr23:16,168,292...16,181,609 JBrowse link
G LOC103245010 heterogeneous nuclear ribonucleoprotein A1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:77,141,917...77,143,427 JBrowse link
G LOC103245886 heterogeneous nuclear ribonucleoprotein A1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:47,513,308...47,515,651 JBrowse link
G LOC119618426 U6 snRNA-associated Sm-like protein LSm6 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118
G LOC119622192 heterogeneous nuclear ribonucleoprotein A1-like involved_in IEA TreeGrafter GO_REF:0000118
G LOC119625213 heterogeneous nuclear ribonucleoproteins A2/B1 involved_in IEA TreeGrafter GO_REF:0000118
G LOC119626618 heterogeneous nuclear ribonucleoprotein A1-like involved_in IEA TreeGrafter GO_REF:0000118
G LOC119627169 small nuclear ribonucleoprotein G-like involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118
G LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr17:40,214,726...40,226,753
Ensembl chr17:40,214,771...40,226,545 		JBrowse link
G LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in
acts_upstream_of_or_within		 ISO (PMID:28781166)
(PMID:10369684), (PMID:10523320)		 UniProt
MGI		 PMID:10369684 PMID:10523320 PMID:28781166 NCBI chr22:50,121,674...50,141,071 JBrowse link
G LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 6:16,783,566...16,800,116
Ensembl chr 6:16,782,746...16,800,143 		JBrowse link
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chr21:25,921,288...25,925,237 JBrowse link
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:92,719,482...92,734,351
Ensembl chr 7:92,719,503...92,735,321 		JBrowse link
G LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:2,108,212...2,121,547
Ensembl chr 6:2,108,212...2,121,571 		JBrowse link
G LSM8 LSM8 homolog, U6 small nuclear RNA associated involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr21:86,838,350...86,846,675
Ensembl chr21:86,838,375...86,846,517 		JBrowse link
G MAGOHB mago homolog B, exon junction complex subunit involved_in ISO (PMID:28502770) UniProt PMID:28502770 NCBI chr11:10,406,698...10,414,504 JBrowse link
G METTL14 methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:66,169,080...66,195,324
Ensembl chr 7:66,168,855...66,194,121 		JBrowse link
G METTL3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit NOT|involved_in ISO (MGI:6095345|PMID:28637692)
(MGI:5621227|PMID:25569111)
(PMID:25719671), (PMID:26321680)		 UniProt PMID:25569111 PMID:25719671 PMID:26321680 PMID:28637692 MGI:5621227 MGI:6095345 NCBI chr29:21,967,309...21,981,251
Ensembl chr29:21,963,982...21,981,579 		JBrowse link
G MFAP1 microfibril associated protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:39,220,477...39,239,964
Ensembl chr26:39,220,221...39,240,532 		JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:90,306,640...90,314,293
Ensembl chr15:90,306,640...90,313,019 		JBrowse link
G NCBP2L nuclear cap binding protein subunit 2 like involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr  X:95,623,546...95,624,004 JBrowse link
G NHP2 NHP2 ribonucleoprotein involved_in IEA UniProt GO_REF:0000104 NCBI chr23:79,842,690...79,847,138
Ensembl chr23:79,842,948...79,846,984 		JBrowse link
G NOVA1 NOVA alternative splicing regulator 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10719891) TreeGrafter
MGI		 PMID:10719891 GO_REF:0000118 NCBI chr24:3,363,652...3,513,901
Ensembl chr24:3,360,831...3,514,435 		JBrowse link
G NOVA2 NOVA alternative splicing regulator 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:39,390,384...39,428,290
Ensembl chr 6:39,393,868...39,428,272 		JBrowse link
G PAXBP1 PAX3 and PAX7 binding protein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:59,378,828...59,416,394
Ensembl chr 2:59,379,110...59,416,988 		JBrowse link
G PHF5A PHD finger protein 5A involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr19:23,998,277...24,008,504
Ensembl chr19:23,998,127...24,008,173 		JBrowse link
G PLRG1 pleiotropic regulator 1 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:101,080,254...101,096,048
Ensembl chr 7:101,079,449...101,096,174 		JBrowse link
G PPIE peptidylprolyl isomerase E involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:93,345,338...93,360,739
Ensembl chr20:93,345,400...93,360,398 		JBrowse link
G PPIL1 peptidylprolyl isomerase like 1 involved_in ISO (PMID:28076346)
(PMID:33220177)		 UniProt PMID:28076346 PMID:33220177 NCBI chr17:35,260,471...35,281,367 JBrowse link
G PPP1R8 protein phosphatase 1 regulatory subunit 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:104,945,719...104,965,970
Ensembl chr20:104,945,566...104,966,252 		JBrowse link
G PRPF19 pre-mRNA processing factor 19 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 1:12,942,238...12,958,853
Ensembl chr 1:12,942,213...12,959,947 		JBrowse link
G PRPF3 pre-mRNA processing factor 3 involved_in ISO (PMID:28781166) UniProt PMID:28781166
G PRPF31 pre-mRNA processing factor 31 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11867543) MGI
TreeGrafter
InterPro		 PMID:11867543 GO_REF:0000002 GO_REF:0000118 NCBI chr 6:46,790,193...46,808,946
Ensembl chr 6:46,793,455...46,808,948 		JBrowse link
G PRPF38A pre-mRNA processing factor 38A involved_in ISO (PMID:28781166)
(PMID:26673105)		 UniProt PMID:26673105 PMID:28781166 NCBI chr20:80,527,475...80,540,230 JBrowse link
G PRPF38B pre-mRNA processing factor 38B involved_in IEA UniProt GO_REF:0000104 NCBI chr20:24,884,889...24,893,818
Ensembl chr20:24,882,780...24,893,535 		JBrowse link
G PRPF4 pre-mRNA splicing tri-snRNP complex factor PRPF4 involved_in ISO (PMID:28781166) UniProt PMID:28781166 NCBI chr12:26,279,510...26,296,771 JBrowse link
G PRPF4 pre-mRNA processing factor 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr12:26,277,388...26,293,083 JBrowse link
G PRPF40A pre-mRNA processing factor 40 homolog A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:38,086,971...38,151,726
Ensembl chr10:38,088,281...38,151,371 		JBrowse link
G PRPF40B pre-mRNA processing factor 40 homolog B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:45,868,789...45,890,035
Ensembl chr11:45,875,889...45,889,562 		JBrowse link
G PRPF6 pre-mRNA processing factor 6 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 2:211,482...259,590
Ensembl chr 2:211,604...259,447 		JBrowse link
G PRPF8 pre-mRNA processing factor 8 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:1,321,568...1,352,775
Ensembl chr16:1,321,416...1,352,466 		JBrowse link
G RBM10 RNA binding motif protein 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:44,339,653...44,373,509
Ensembl chr  X:44,339,877...44,373,339 		JBrowse link
G RBM41 RNA binding motif protein 41 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:94,884,887...94,941,465
Ensembl chr  X:94,885,155...94,940,996 		JBrowse link
G RBM44 RNA binding motif protein 44 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:123,816,053...123,861,117
Ensembl chr10:123,831,247...123,852,787 		JBrowse link
G RBM5 RNA binding motif protein 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:11,473,623...11,505,251
Ensembl chr22:11,473,494...11,507,096 		JBrowse link
G RBM6 RNA binding motif protein 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:11,343,260...11,462,390
Ensembl chr22:11,343,214...11,461,504 		JBrowse link
G RBM8A RNA binding motif protein 8A involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:12,819,891...12,821,656
Ensembl chr20:12,819,956...12,821,629 		JBrowse link
G RBMX2 RNA binding motif protein X-linked 2 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:105,660,294...105,671,417
Ensembl chr  X:105,660,614...105,670,921 		JBrowse link
G RNF113A ring finger protein 113A involved_in ISO (PMID:29360106) UniProt PMID:29360106
G RNPC3 RNA binding region (RNP1, RRM) containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:29,862,583...29,893,812
Ensembl chr20:29,866,073...29,893,431 		JBrowse link
G RSRC1 arginine and serine rich coiled-coil 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:32,283,999...32,684,786
Ensembl chr15:32,280,514...32,680,618 		JBrowse link
G SART1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:8,279,821...8,296,282
Ensembl chr 1:8,275,123...8,296,245 		JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:103,716,517...103,752,087
Ensembl chr11:103,715,292...103,751,874 		JBrowse link
G SF1 splicing factor 1 involved_in IEA UniProt GO_REF:0000104 NCBI chr 1:9,456,524...9,470,920
Ensembl chr 1:9,456,971...9,472,396 		JBrowse link
G SF3A1 splicing factor 3a subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:13,213,059...13,237,200
Ensembl chr19:13,211,275...13,237,257 		JBrowse link
G SF3A2 splicing factor 3a subunit 2 involved_in ISO (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247) UniProt PMID:29360106 PMID:32494006 PMID:34822310 PMID:36797247 NCBI chr 6:2,034,892...2,047,653
Ensembl chr 6:2,041,384...2,047,542 		JBrowse link
G SF3A3 splicing factor 3a subunit 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr20:94,880,104...94,907,656
Ensembl chr20:94,880,059...94,909,069 		JBrowse link
G SF3B1 splicing factor 3b subunit 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:11252167)
(PMID:23211737)
(PMID:27720643), (PMID:28781166), (PMID:29360106), (PMID:32494006), (PMID:34822310), (PMID:36797247)		 MGI
UniProt		 PMID:11252167 PMID:23211737 PMID:27720643 PMID:28781166 PMID:29360106 More... NCBI chr10:82,901,908...82,952,094
Ensembl chr10:82,899,079...82,952,071 		JBrowse link
G SF3B2 splicing factor 3b subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:8,189,636...8,207,024
Ensembl chr 1:8,189,446...8,207,020 		JBrowse link
G SF3B3 splicing factor 3b subunit 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:53,673,443...53,724,485
Ensembl chr 5:53,673,455...53,725,615 		JBrowse link
G SF3B4 splicing factor 3b subunit 4 involved_in IEA Ensembl GO_REF:0000107
G SF3B5 splicing factor 3b subunit 5 involved_in IEA UniProt
TreeGrafter
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr13:29,144,964...29,145,699
Ensembl chr13:29,145,071...29,145,694 		JBrowse link
G SF3B6 splicing factor 3b subunit 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23211737) Ensembl
MGI		 PMID:23211737 GO_REF:0000107 NCBI chr14:83,593,429...83,602,309
Ensembl chr14:83,593,025...83,604,002 		JBrowse link
G SLC4A1AP solute carrier family 4 member 1 adaptor protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:79,934,049...79,965,589
Ensembl chr14:79,931,917...79,966,493 		JBrowse link
G SLU7 SLU7 homolog, splicing factor involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr23:62,761,466...62,778,613
Ensembl chr23:62,764,335...62,778,910 		JBrowse link
G SMU1 SMU1 DNA replication regulator and spliceosomal factor involved_in IEA InterPro GO_REF:0000002 NCBI chr12:47,188,919...47,214,320 JBrowse link
G SNIP1 Smad nuclear interacting protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:95,315,272...95,327,402
Ensembl chr20:95,315,297...95,336,101 		JBrowse link
G SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 involved_in ISO (PMID:29301961), (PMID:8670905) UniProt PMID:8670905 PMID:29301961 NCBI chr14:693,873...724,226
Ensembl chr14:694,126...724,208 		JBrowse link
G SNRNP35 small nuclear ribonucleoprotein U11/U12 subunit 35 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:118,789,920...118,798,820
Ensembl chr11:118,797,972...118,798,712 		JBrowse link
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:42,305,961...42,329,289
Ensembl chr 6:42,305,687...42,330,332 		JBrowse link
G SNRPA small nuclear ribonucleoprotein polypeptide A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:35,204,017...35,219,810
Ensembl chr 6:35,203,929...35,220,689 		JBrowse link
G SNRPA1 small nuclear ribonucleoprotein polypeptide A' involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr29:19,736,050...19,750,104
Ensembl chr29:19,735,986...19,749,838 		JBrowse link
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:54,064,240...54,073,341
Ensembl chr 2:54,063,999...54,073,367 		JBrowse link
G SNRPB2 small nuclear ribonucleoprotein polypeptide B2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:45,654,264...45,666,073
Ensembl chr 2:45,654,285...45,667,736 		JBrowse link
G SNRPC small nuclear ribonucleoprotein polypeptide C involved_in IEA InterPro GO_REF:0000002 NCBI chr17:37,332,697...37,348,968
Ensembl chr17:37,332,687...37,349,133 		JBrowse link
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:58,860,447...58,876,216
Ensembl chr18:58,858,822...58,876,198 		JBrowse link
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:39,127,974...39,134,771
Ensembl chr 6:39,127,877...39,134,626 		JBrowse link
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:7,560,946...7,577,338
Ensembl chr19:7,417,483...7,577,914 		JBrowse link
G SNRPE small nuclear ribonucleoprotein polypeptide E involved_in IEA InterPro GO_REF:0000002 NCBI chr25:25,474,620...25,483,427 JBrowse link
G SNRPF small nuclear ribonucleoprotein polypeptide F involved_in ISO (PMID:28076346), (PMID:32494006), (PMID:36797247) UniProt PMID:28076346 PMID:32494006 PMID:36797247 NCBI chr11:91,244,619...91,251,805 JBrowse link
G SNRPF small nuclear ribonucleoprotein polypeptide F involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 Ensembl chr11:91,244,648...91,251,733 JBrowse link
G SNRPG small nuclear ribonucleoprotein polypeptide G involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr14:36,823,959...36,858,240
Ensembl chr14:36,826,779...36,837,137 		JBrowse link
G SNRPN small nuclear ribonucleoprotein polypeptide N involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:57,087,556...57,198,464
Ensembl chr26:57,087,695...57,091,671 		JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 involved_in IEA TreeGrafter
UniProt		 GO_REF:0000104 GO_REF:0000118 NCBI chr19:24,209,356...24,223,431
Ensembl chr19:24,206,653...24,216,686 		JBrowse link
G SNW1 SNW domain containing 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr24:54,976,597...55,020,051
Ensembl chr24:54,977,083...55,019,988 		JBrowse link
G SRRM2 serine/arginine repetitive matrix 2 involved_in ISO (PMID:28076346) UniProt PMID:28076346 NCBI chr 5:2,570,566...2,589,355
Ensembl chr 5:2,571,109...2,585,640 		JBrowse link
G SRSF10 serine and arginine rich splicing factor 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:108,713,392...108,728,908
Ensembl chr20:108,721,666...108,722,522 		JBrowse link
G SRSF12 serine and arginine rich splicing factor 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:13,864,683...13,884,424
Ensembl chr13:13,864,870...13,884,334 		JBrowse link
G SRSF3 serine and arginine rich splicing factor 3 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr17:35,537,336...35,544,826 JBrowse link
G SRSF7 serine and arginine rich splicing factor 7 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr14:68,629,976...68,636,714 JBrowse link
G SYF2 SYF2 pre-mRNA splicing factor involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr20:107,468,855...107,478,822
Ensembl chr20:107,468,940...107,479,036 		JBrowse link
G TRA2A transformer 2 alpha homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:34,787,839...34,816,299
Ensembl chr21:34,787,827...34,816,881 		JBrowse link
G TRA2B transformer 2 beta homolog involved_in
acts_upstream_of		 ISO (PMID:9546399)
(PMID:22194695)		 UniProt
MGI		 PMID:9546399 PMID:22194695 NCBI chr15:3,493,287...3,514,421
Ensembl chr15:3,493,541...3,513,994 		JBrowse link
G TXNL4A thioredoxin like 4A involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr18:270,392...286,243
Ensembl chr18:270,938...285,966 		JBrowse link
G TXNL4B thioredoxin like 4B involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:55,180,335...55,244,607
Ensembl chr 5:55,235,939...55,243,848 		JBrowse link
G U2AF1L4 U2 small nuclear RNA auxiliary factor 1 like 4 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 Ensembl chr 6:30,652,244...30,654,982 JBrowse link
G U2AF2 U2 small nuclear RNA auxiliary factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:48,244,247...48,265,029
Ensembl chr 6:48,245,297...48,265,019 		JBrowse link
G UBL5 ubiquitin like 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:8,899,889...8,902,462
Ensembl chr 6:8,899,970...8,902,459 		JBrowse link
G USP39 ubiquitin specific peptidase 39 involved_in ISO (PMID:11350945) UniProt PMID:11350945 NCBI chr14:21,507,666...21,554,819
Ensembl chr14:21,508,104...21,541,553 		JBrowse link
G USP49 ubiquitin specific peptidase 49 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:30,265,322...30,373,547
Ensembl chr17:30,356,698...30,366,940 		JBrowse link
G WBP4 WW domain binding protein 4 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 3:19,332,616...19,355,594
Ensembl chr 3:19,332,766...19,356,162 		JBrowse link
G WDR38 WD repeat domain 38 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:13,290,713...13,296,075
Ensembl chr12:13,290,954...13,295,025 		JBrowse link
G WDR83 WD repeat domain 83 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:11,358,172...11,364,301
Ensembl chr 6:11,358,254...11,364,147 		JBrowse link
G XAB2 XPA binding protein 2 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:7,105,353...7,116,063
Ensembl chr 6:7,104,785...7,116,020 		JBrowse link
G YJU2 YJU2 splicing factor homolog involved_in IEA InterPro GO_REF:0000002 Ensembl chr 6:3,995,758...4,012,888 JBrowse link
G YJU2B YJU2 splicing factor homolog B involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:12,408,839...12,423,920
Ensembl chr 6:12,409,702...12,423,968 		JBrowse link
G YTHDC1 YTH N6-methyladenosine RNA binding protein C1 involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:10564280 GO_REF:0000118 RGD:634512 NCBI chr 7:633,158...670,000
Ensembl chr 7:633,172...671,030 		JBrowse link
G ZCRB1 zinc finger CCHC-type and RNA binding motif containing 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr11:38,547,928...38,563,803
Ensembl chr11:38,547,881...38,564,522 		JBrowse link
G ZMAT2 zinc finger matrin-type 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr23:43,333,078...43,340,082
Ensembl chr23:43,333,164...43,339,163 		JBrowse link
G ZRSR2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 involved_in IEA
ISO		 InterPro
TreeGrafter
RGD
Ensembl		 PMID:33691379 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:151232289 NCBI chr  X:14,247,231...14,279,466
Ensembl chr  X:14,247,287...14,279,448 		JBrowse link
alternative mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK13 cyclin dependent kinase 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:18,551,273...18,688,889
Ensembl chr21:18,553,446...18,688,525 		JBrowse link
G CELF4 CUGBP Elav-like family member 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19720736) MGI
Ensembl		 PMID:19720736 GO_REF:0000107 NCBI chr18:43,314,960...43,635,301
Ensembl chr18:43,603,021...43,624,537 		JBrowse link
G DDX17 DEAD-box helicase 17 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr19:21,145,576...21,167,091
Ensembl chr19:21,145,417...21,167,543 		JBrowse link
G DDX5 DEAD-box helicase 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:56,766,669...56,773,767
Ensembl chr16:56,767,186...56,773,464 		JBrowse link
G DHX9 DExH-box helicase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:46,485,602...46,534,046
Ensembl chr25:46,485,427...46,518,406 		JBrowse link
G ESRP1 epithelial splicing regulatory protein 1 acts_upstream_of_or_within ISO (PMID:26371508) MGI PMID:26371508 NCBI chr 8:89,609,723...89,679,035
Ensembl chr 8:89,608,014...89,679,037 		JBrowse link
G ESRP2 epithelial splicing regulatory protein 2 acts_upstream_of_or_within ISO (PMID:26371508) MGI PMID:26371508 NCBI chr 5:59,184,624...59,192,842
Ensembl chr 5:59,186,167...59,197,003 		JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 acts_upstream_of_or_within ISO (PMID:15798186) MGI PMID:15798186 NCBI chr11:50,397,173...50,403,192
Ensembl chr11:50,396,888...50,400,802 		JBrowse link
G HNRNPM heterogeneous nuclear ribonucleoprotein M involved_in ISO (PMID:19874820) BHF-UCL PMID:19874820 NCBI chr 6:7,795,996...7,839,506
Ensembl chr 6:7,796,045...7,839,244 		JBrowse link
G MBNL1 muscleblind like splicing regulator 1 acts_upstream_of_or_within ISO (PMID:19720736)
(PMID:19075228)		 MGI PMID:19075228 PMID:19720736 NCBI chr15:38,208,694...38,427,867
Ensembl chr15:38,208,038...38,375,273 		JBrowse link
G PQBP1 polyglutamine binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:46,014,664...46,020,204
Ensembl chr  X:46,015,250...46,023,988 		JBrowse link
G PUF60 poly(U) binding splicing factor 60 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:138,034,526...138,047,485
Ensembl chr 8:138,034,395...138,042,468 		JBrowse link
G RBM17 RNA binding motif protein 17 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:6,213,477...6,240,945
Ensembl chr 9:6,221,570...6,239,678 		JBrowse link
G RSRC1 arginine and serine rich coiled-coil 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15798186) InterPro
MGI
TreeGrafter
Ensembl		 PMID:15798186 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr15:32,283,999...32,684,786
Ensembl chr15:32,280,514...32,680,618 		JBrowse link
G SFPQ splicing factor proline and glutamine rich involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:97,698,953...97,715,762
Ensembl chr20:97,698,411...97,711,294 		JBrowse link
G SFSWAP splicing factor SWAP involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8940107) Ensembl
MGI		 PMID:8940107 GO_REF:0000107 NCBI chr11:127,086,690...127,177,327
Ensembl chr11:127,086,668...127,177,324 		JBrowse link
G SLU7 SLU7 homolog, splicing factor involved_in ISO (PMID:15728250) HGNC-UCL PMID:15728250 NCBI chr23:62,761,466...62,778,613
Ensembl chr23:62,764,335...62,778,910 		JBrowse link
G SRSF1 serine and arginine rich splicing factor 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:23462647 GO_REF:0000107 RGD:11038736 NCBI chr16:35,392,573...35,396,815
Ensembl chr16:35,392,873...35,394,982 		JBrowse link
G SRSF6 serine and arginine rich splicing factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:20,340,163...20,345,873
Ensembl chr 2:20,342,681...20,346,122 		JBrowse link
G STRAP serine/threonine kinase receptor associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:15,790,449...15,812,964
Ensembl chr11:15,790,798...15,813,585 		JBrowse link
generation of catalytic spliceosome for first transesterification step term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G XAB2 XPA binding protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:7,105,353...7,116,063
Ensembl chr 6:7,104,785...7,116,020 		JBrowse link
G YJU2 YJU2 splicing factor homolog involved_in IEA UniProt GO_REF:0000104 Ensembl chr 6:3,995,758...4,012,888 JBrowse link
generation of catalytic spliceosome for second transesterification step term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ISY1 ISY1 splicing factor homolog involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr22:51,905,564...51,940,705
Ensembl chr22:51,907,290...51,938,847 		JBrowse link
G PRPF18 pre-mRNA processing factor 18 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:13,606,432...13,650,727
Ensembl chr 9:13,606,433...13,652,849 		JBrowse link
mRNA 3'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ISY1 ISY1 splicing factor homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:51,905,564...51,940,705
Ensembl chr22:51,907,290...51,938,847 		JBrowse link
G SLU7 SLU7 homolog, splicing factor involved_in ISO (PMID:15728250) HGNC-UCL PMID:15728250 NCBI chr23:62,761,466...62,778,613
Ensembl chr23:62,764,335...62,778,910 		JBrowse link
mRNA 5'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PRPF39 pre-mRNA processing factor 39 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:22,204,010...22,235,740
Ensembl chr24:22,216,451...22,239,051 		JBrowse link
G PSIP1 PC4 and SRSF1 interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:64,086,611...64,137,298
Ensembl chr12:64,087,189...64,140,661 		JBrowse link
G SFSWAP splicing factor SWAP involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8940107) Ensembl
MGI
TreeGrafter		 PMID:8940107 GO_REF:0000107 GO_REF:0000118 NCBI chr11:127,086,690...127,177,327
Ensembl chr11:127,086,668...127,177,324 		JBrowse link
G SNRPC small nuclear ribonucleoprotein polypeptide C involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr17:37,332,697...37,348,968
Ensembl chr17:37,332,687...37,349,133 		JBrowse link
G SRSF1 serine and arginine rich splicing factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:35,392,573...35,396,815
Ensembl chr16:35,392,873...35,394,982 		JBrowse link
G SRSF12 serine and arginine rich splicing factor 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:13,864,683...13,884,424
Ensembl chr13:13,864,870...13,884,334 		JBrowse link
mRNA cis splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CACTIN cactin, spliceosome C complex subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:3,369,445...3,386,684
Ensembl chr 6:3,369,279...3,383,226 		JBrowse link
G CLNS1A chloride nucleotide-sensitive channel 1A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:68,830,943...68,853,490
Ensembl chr 1:68,834,327...68,853,492 		JBrowse link
G CUNH9orf78 chromosome unknown C9orf78 homolog involved_in ISO (PMID:35241646) UniProt PMID:35241646 NCBI chr12:8,300,869...8,309,620
Ensembl chr12:8,301,195...8,309,900 		JBrowse link
G CWC15 CWC15 spliceosome associated protein homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:86,180,225...86,190,445
Ensembl chr 1:86,179,366...86,190,439 		JBrowse link
G DCPS decapping enzyme, scavenger involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:117,430,713...117,470,489
Ensembl chr 1:117,430,993...117,474,986 		JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr15:90,306,640...90,314,293
Ensembl chr15:90,306,640...90,313,019 		JBrowse link
G NCBP2L nuclear cap binding protein subunit 2 like involved_in IEA InterPro GO_REF:0000002 Ensembl chr  X:95,623,546...95,624,004 JBrowse link
G PRP4K pre-mRNA processing factor kinase PRP4K involved_in IEA InterPro GO_REF:0000002 NCBI chr17:68,110,544...68,153,939
Ensembl chr17:68,114,973...68,153,844 		JBrowse link
G PRPF40A pre-mRNA processing factor 40 homolog A involved_in IEA InterPro GO_REF:0000002 NCBI chr10:38,086,971...38,151,726
Ensembl chr10:38,088,281...38,151,371 		JBrowse link
G PRPF40B pre-mRNA processing factor 40 homolog B involved_in IEA InterPro GO_REF:0000002 NCBI chr11:45,868,789...45,890,035
Ensembl chr11:45,875,889...45,889,562 		JBrowse link
G RBM17 RNA binding motif protein 17 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 9:6,213,477...6,240,945
Ensembl chr 9:6,221,570...6,239,678 		JBrowse link
G RBM22 RNA binding motif protein 22 involved_in ISO (PMID:22246180) UniProt PMID:22246180 NCBI chr23:53,302,697...53,312,382 JBrowse link
G SART1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:8,279,821...8,296,282
Ensembl chr 1:8,275,123...8,296,245 		JBrowse link
G SDE2 SDE2 telomere maintenance homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:3,779,561...3,793,496
Ensembl chr25:3,779,560...3,795,893 		JBrowse link
G SF3A1 splicing factor 3a subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr19:13,213,059...13,237,200
Ensembl chr19:13,211,275...13,237,257 		JBrowse link
G WBP4 WW domain binding protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:19,332,616...19,355,594
Ensembl chr 3:19,332,766...19,356,162 		JBrowse link
mRNA splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CELF1 CUGBP Elav-like family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11158314) TreeGrafter
MGI		 PMID:11158314 GO_REF:0000118 NCBI chr 1:17,764,915...17,852,974
Ensembl chr 1:17,817,422...17,853,783 		JBrowse link
G CELF2 CUGBP Elav-like family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11158314) TreeGrafter
MGI		 PMID:11158314 GO_REF:0000118 NCBI chr 9:10,534,623...11,395,516
Ensembl chr 9:11,080,404...11,388,136 		JBrowse link
G CELF3 CUGBP Elav-like family member 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:11,973,531...11,988,560
Ensembl chr20:11,981,181...11,992,302 		JBrowse link
G CELF4 CUGBP Elav-like family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11158314) Ensembl
MGI
TreeGrafter		 PMID:11158314 GO_REF:0000107 GO_REF:0000118 NCBI chr18:43,314,960...43,635,301
Ensembl chr18:43,603,021...43,624,537 		JBrowse link
G CELF5 CUGBP Elav-like family member 5 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 6:3,041,933...3,055,376 JBrowse link
G CELF6 CUGBP Elav-like family member 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:11,135,021...11,169,351
Ensembl chr26:11,135,088...11,166,493 		JBrowse link
G KHDC4 KH domain containing 4, pre-mRNA splicing factor involved_in ISO (PMID:19641227) UniProt PMID:19641227 NCBI chr20:7,941,544...7,964,325
Ensembl chr20:7,941,613...7,963,603 		JBrowse link
G LOC103226996 putative RNA-binding protein Luc7-like 2 involved_in IEA InterPro
UniProt
TreeGrafter		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr21:108,105,469...108,172,026
Ensembl chr21:108,105,885...108,173,735 		JBrowse link
G LUC7L LUC7 like involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 5:132,018...176,060
Ensembl chr 5:128,232...176,020 		JBrowse link
G LUC7L3 LUC7 like 3 pre-mRNA splicing factor involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr16:42,588,260...42,619,162
Ensembl chr16:42,588,735...42,619,162 		JBrowse link
G MBNL1 muscleblind like splicing regulator 1 acts_upstream_of_or_within ISO (PMID:14671308), (PMID:16717059) MGI PMID:14671308 PMID:16717059 NCBI chr15:38,208,694...38,427,867
Ensembl chr15:38,208,038...38,375,273 		JBrowse link
G NOL3 nucleolar protein 3 involved_in ISO (PMID:10196175) UniProt PMID:10196175 NCBI chr 5:60,281,492...60,286,865 JBrowse link
G PTBP2 polypyrimidine tract binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22802532)
(PMID:10829067)		 Ensembl
MGI		 PMID:10829067 PMID:22802532 GO_REF:0000107 NCBI chr20:36,465,812...36,559,480
Ensembl chr20:36,464,689...36,559,307 		JBrowse link
G PUF60 poly(U) binding splicing factor 60 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:138,034,526...138,047,485
Ensembl chr 8:138,034,395...138,042,468 		JBrowse link
G RBMX RNA binding motif protein X-linked ISO RGD PMID:19282290 RGD:2316827 NCBI chr  X:111,880,859...111,892,660 JBrowse link
G RBMXL1 RBMX like 1 involved_in ISO PMID:19282290 UniProt PMID:19282290 RGD:2316827 NCBI chr20:44,416,179...44,428,807 JBrowse link
G SETX senataxin involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:5,773,122...5,872,372
Ensembl chr12:5,773,165...5,875,481 		JBrowse link
G SRSF10 serine and arginine rich splicing factor 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:108,713,392...108,728,908
Ensembl chr20:108,721,666...108,722,522 		JBrowse link
G SRSF6 serine and arginine rich splicing factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:20,340,163...20,345,873
Ensembl chr 2:20,342,681...20,346,122 		JBrowse link
G YTHDC1 YTH N6-methyladenosine RNA binding protein C1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:633,158...670,000
Ensembl chr 7:633,172...671,030 		JBrowse link
negative regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACIN1 apoptotic chromatin condensation inducer 1 involved_in ISO (PMID:12665594) UniProt PMID:12665594 NCBI chr29:23,427,866...23,464,717
Ensembl chr29:23,427,573...23,464,394 		JBrowse link
G C1QBP complement C1q binding protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:4,843,202...4,850,639
Ensembl chr16:4,843,438...4,850,600 		JBrowse link
G CELF4 CUGBP Elav-like family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23636947) Ensembl
MGI		 PMID:23636947 GO_REF:0000107 NCBI chr18:43,314,960...43,635,301
Ensembl chr18:43,603,021...43,624,537 		JBrowse link
G DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A acts_upstream_of_or_within ISO (PMID:21470964) MGI PMID:21470964 NCBI chr 2:81,318,509...81,467,227
Ensembl chr 2:81,425,902...81,467,677 		JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 acts_upstream_of_or_within ISO (PMID:18480465) MGI PMID:18480465 NCBI chr21:32,167,126...32,178,031
Ensembl chr21:32,167,337...32,176,980 		JBrowse link
G HNRNPK heterogeneous nuclear ribonucleoprotein K acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chr12:94,768,403...94,789,957
Ensembl chr12:94,768,480...94,789,743 		JBrowse link
G HNRNPL heterogeneous nuclear ribonucleoprotein L ISO RGD PMID:22570490 RGD:9999428 NCBI chr 6:33,452,705...33,469,070
Ensembl chr 6:33,452,852...33,466,284 		JBrowse link
G NPM1 nucleophosmin 1 acts_upstream_of_or_within ISO (PMID:16376875) MGI PMID:16376875 NCBI chr23:73,555,020...73,575,910
Ensembl chr23:73,555,260...73,575,925 		JBrowse link
G PCBP4 poly(rC) binding protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23636947) TreeGrafter
MGI		 PMID:23636947 GO_REF:0000118 NCBI chr22:13,326,069...13,336,474
Ensembl chr22:13,325,551...13,329,903 		JBrowse link
G PTBP1 polypyrimidine tract binding protein 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:15009664)
(PMID:23636947)
(MGI:6271441|PMID:17679093)		 UniProt
MGI
ARUK-UCL		 PMID:15009664 PMID:17679093 PMID:23636947 MGI:6271441 NCBI chr 6:546,010...560,086
Ensembl chr 6:545,964...562,630 		JBrowse link
G PTBP3 polypyrimidine tract binding protein 3 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chr12:27,179,727...27,295,046
Ensembl chr12:27,179,747...27,289,764 		JBrowse link
G RBM10 RNA binding motif protein 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23636947) Ensembl
MGI		 PMID:23636947 GO_REF:0000107 NCBI chr  X:44,339,653...44,373,509
Ensembl chr  X:44,339,877...44,373,339 		JBrowse link
G RBM20 RNA binding motif protein 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:103,583,722...103,775,391
Ensembl chr 9:103,703,569...103,777,934 		JBrowse link
G RBM42 RNA binding motif protein 42 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23636947) Ensembl
MGI		 PMID:23636947 GO_REF:0000107 NCBI chr 6:30,539,718...30,548,412
Ensembl chr 6:30,539,721...30,548,414 		JBrowse link
G RBMXL1 RBMX like 1 involved_in ISO PMID:15009664 UniProt PMID:15009664 RGD:8554197 NCBI chr20:44,416,179...44,428,807 JBrowse link
G RNPS1 RNA binding protein with serine rich domain 1 involved_in ISO (PMID:12665594) UniProt PMID:12665594 NCBI chr 5:2,148,929...2,163,810 JBrowse link
G SAP18 Sin3A associated protein 18 involved_in ISO (PMID:12665594) UniProt PMID:12665594 NCBI chr 3:63,736...72,521
Ensembl chr 3:61,957...72,524 		JBrowse link
G SFSWAP splicing factor SWAP involved_in ISO PMID:15009664 UniProt PMID:15009664 RGD:8554197 NCBI chr11:127,086,690...127,177,327
Ensembl chr11:127,086,668...127,177,324 		JBrowse link
G SRSF10 serine and arginine rich splicing factor 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:108,713,392...108,728,908
Ensembl chr20:108,721,666...108,722,522 		JBrowse link
G SRSF4 serine and arginine rich splicing factor 4 involved_in ISO (PMID:15009664) UniProt PMID:15009664 NCBI chr20:103,641,650...103,674,066
Ensembl chr20:103,642,150...103,673,391 		JBrowse link
G SRSF6 serine and arginine rich splicing factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:20,340,163...20,345,873
Ensembl chr 2:20,342,681...20,346,122 		JBrowse link
G SRSF7 serine and arginine rich splicing factor 7 involved_in ISO (PMID:15009664) UniProt PMID:15009664 NCBI chr14:68,629,812...68,636,958 JBrowse link
G SRSF7 serine and arginine rich splicing factor 7 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr14:68,629,976...68,636,714 JBrowse link
G SRSF9 serine and arginine rich splicing factor 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:115,813,964...115,822,753
Ensembl chr11:115,810,642...115,822,700 		JBrowse link
G U2AF2 U2 small nuclear RNA auxiliary factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:48,244,247...48,265,029
Ensembl chr 6:48,245,297...48,265,019 		JBrowse link
positive regulation of mRNA cis splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EIF1 eukaryotic translation initiation factor 1 acts_upstream_of_or_within ISO (PMID:16789828) MGI PMID:16789828 NCBI chr16:64,549,687...64,552,312 JBrowse link
G EIF1 eukaryotic translation initiation factor 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:64,549,689...64,552,343 JBrowse link
G EXOSC10 exosome component 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16789828) Ensembl
MGI		 PMID:16789828 GO_REF:0000107 NCBI chr20:120,672,590...120,694,887
Ensembl chr20:120,672,645...120,710,775 		JBrowse link
G UPF1 UPF1 RNA helicase and ATPase acts_upstream_of_or_within ISO (PMID:16789828) MGI PMID:16789828 NCBI chr 6:17,291,189...17,328,768
Ensembl chr 6:17,291,175...17,330,193 		JBrowse link
G UPF3A UPF3A regulator of nonsense mediated mRNA decay involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16789828) Ensembl
MGI		 PMID:16789828 GO_REF:0000107 NCBI chr 3:92,066,229...92,089,868
Ensembl chr 3:92,066,248...92,088,976 		JBrowse link
G UPF3B UPF3B regulator of nonsense mediated mRNA decay acts_upstream_of_or_within ISO (PMID:16789828) MGI PMID:16789828
positive regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CELF3 CUGBP Elav-like family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:11,973,531...11,988,560
Ensembl chr20:11,981,181...11,992,302 		JBrowse link
G CELF4 CUGBP Elav-like family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:43,314,960...43,635,301
Ensembl chr18:43,603,021...43,624,537 		JBrowse link
G CIRBP cold inducible RNA binding protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:1,037,389...1,043,265
Ensembl chr 6:1,039,401...1,042,187 		JBrowse link
G DAZAP1 DAZ associated protein 1 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chr 6:1,181,416...1,208,784
Ensembl chr 6:1,181,408...1,208,838 		JBrowse link
G EIF4A3 eukaryotic translation initiation factor 4A3 acts_upstream_of_or_within ISO (PMID:18480465) MGI PMID:18480465 NCBI chr16:72,097,692...72,113,112 JBrowse link
G HMX2 H6 family homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23636947) Ensembl
MGI		 PMID:23636947 GO_REF:0000107 NCBI chr 9:115,818,448...115,825,664
Ensembl chr 9:115,819,760...115,821,508 		JBrowse link
G HSPA8 heat shock protein family A (Hsp70) member 8 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chr 1:114,447,348...114,452,693
Ensembl chr 1:114,446,544...114,451,562 		JBrowse link
G LMNTD2 lamin tail domain containing 2 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chr 1:370,216...374,411
Ensembl chr 1:370,338...374,345 		JBrowse link
G NCBP1 nuclear cap binding protein subunit 1 involved_in ISO (PMID:23793891) CAFA PMID:23793891 NCBI chr12:41,736,063...41,776,178
Ensembl chr12:41,738,579...41,776,509 		JBrowse link
G NUP98 nucleoporin 98 and 96 precursor involved_in ISO (PMID:28221134) UniProt PMID:28221134 NCBI chr 1:62,924,514...63,050,060
Ensembl chr 1:62,925,050...63,050,111 		JBrowse link
G OBI1 ORC ubiquitin ligase 1 acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chr 3:57,683,989...57,726,851
Ensembl chr 3:57,683,746...57,726,750 		JBrowse link
G PRDX6 peroxiredoxin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:55,706,920...55,719,196
Ensembl chr25:55,706,885...55,718,665 		JBrowse link
G PRPF19 pre-mRNA processing factor 19 acts_upstream_of_or_within ISO (PMID:18480465) MGI PMID:18480465 NCBI chr 1:12,942,238...12,958,853
Ensembl chr 1:12,942,213...12,959,947 		JBrowse link
G RBM3 RNA binding motif protein 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:45,702,974...45,707,064
Ensembl chr  X:45,702,275...45,707,075 		JBrowse link
G RBMXL1 RBMX like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:44,416,179...44,428,807 JBrowse link
G RBMXL2 RBMX like 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:57,733,224...57,735,468 JBrowse link
G SF3B4 splicing factor 3b subunit 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23636947) Ensembl
MGI
TreeGrafter		 PMID:23636947 GO_REF:0000107 GO_REF:0000118
G SLC39A5 solute carrier family 39 member 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23636947) Ensembl
MGI		 PMID:23636947 GO_REF:0000107 NCBI chr11:52,183,305...52,192,469
Ensembl chr11:52,184,617...52,191,764 		JBrowse link
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23636947) Ensembl
MGI		 PMID:23636947 GO_REF:0000107 NCBI chr 6:42,305,961...42,329,289
Ensembl chr 6:42,305,687...42,330,332 		JBrowse link
G SNW1 SNW domain containing 1 involved_in ISO (PMID:12840015) UniProt PMID:12840015 NCBI chr24:54,976,597...55,020,051
Ensembl chr24:54,977,083...55,019,988 		JBrowse link
G STH saitohin involved_in ISO (PMID:16186110) UniProt PMID:16186110 NCBI chr16:59,915,844...59,920,081 JBrowse link
G THRAP3 thyroid hormone receptor associated protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:96,552,233...96,631,220
Ensembl chr20:96,552,077...96,599,904 		JBrowse link
G TRA2A transformer 2 alpha homolog involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22194695) TreeGrafter
MGI		 PMID:22194695 GO_REF:0000118 NCBI chr21:34,787,839...34,816,299
Ensembl chr21:34,787,827...34,816,881 		JBrowse link
G TRA2B transformer 2 beta homolog involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22194695) TreeGrafter
MGI		 PMID:22194695 GO_REF:0000118 NCBI chr15:3,493,287...3,514,421
Ensembl chr15:3,493,541...3,513,994 		JBrowse link
G ZFP64 ZFP64 zinc finger protein acts_upstream_of_or_within ISO (PMID:23636947) MGI PMID:23636947 NCBI chr 2:11,812,265...11,908,048
Ensembl chr 2:11,812,448...11,853,553 		JBrowse link
regulation of alternative mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARB2A ARB2 cotranscriptional regulator A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:87,499,061...87,978,159 JBrowse link
G CELF1 CUGBP Elav-like family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:32109384) TreeGrafter
MGI		 PMID:32109384 GO_REF:0000118 NCBI chr 1:17,764,915...17,852,974
Ensembl chr 1:17,817,422...17,853,783 		JBrowse link
G CELF2 CUGBP Elav-like family member 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:10,534,623...11,395,516
Ensembl chr 9:11,080,404...11,388,136 		JBrowse link
G CELF3 CUGBP Elav-like family member 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:11,973,531...11,988,560
Ensembl chr20:11,981,181...11,992,302 		JBrowse link
G CELF4 CUGBP Elav-like family member 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19720736) MGI
TreeGrafter
Ensembl		 PMID:19720736 GO_REF:0000107 GO_REF:0000118 NCBI chr18:43,314,960...43,635,301
Ensembl chr18:43,603,021...43,624,537 		JBrowse link
G CELF5 CUGBP Elav-like family member 5 involved_in ISO (PMID:11158314) UniProt PMID:11158314 NCBI chr 6:2,988,764...3,065,099 JBrowse link
G CELF5 CUGBP Elav-like family member 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr 6:3,041,933...3,055,376 JBrowse link
G CELF6 CUGBP Elav-like family member 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:11,135,021...11,169,351
Ensembl chr26:11,135,088...11,166,493 		JBrowse link
G DDX17 DEAD-box helicase 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:21,145,576...21,167,091
Ensembl chr19:21,145,417...21,167,543 		JBrowse link
G DDX5 DEAD-box helicase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:56,766,669...56,773,767
Ensembl chr16:56,767,186...56,773,464 		JBrowse link
G DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A involved_in ISO PMID:22767602 UniProt PMID:22767602 RGD:8554210 NCBI chr 2:81,318,509...81,467,227
Ensembl chr 2:81,425,902...81,467,677 		JBrowse link
G FMR1 Fragile X messenger ribonucleoprotein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:122,635,383...122,674,298
Ensembl chr  X:122,635,439...122,674,355 		JBrowse link
G FXR1 FMR1 autosomal homolog 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:8,420,789...8,486,681
Ensembl chr15:8,421,654...8,486,384 		JBrowse link
G FXR2 FMR1 autosomal homolog 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:6,969,019...6,995,178
Ensembl chr16:6,967,941...6,995,170 		JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:50,397,173...50,403,192
Ensembl chr11:50,396,888...50,400,802 		JBrowse link
G HNRNPL heterogeneous nuclear ribonucleoprotein L involved_in ISO (PMID:25623890)
(MGI:5441689|PMID:22523384)		 UniProt PMID:22523384 PMID:25623890 MGI:5441689 NCBI chr 6:33,452,705...33,469,070
Ensembl chr 6:33,452,852...33,466,284 		JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr25:81,879,532...81,890,684
Ensembl chr25:81,878,111...81,890,701 		JBrowse link
G KHDRBS1 KH RNA binding domain containing, signal transduction associated 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:100,831,307...100,859,609
Ensembl chr20:100,832,461...100,859,630 		JBrowse link
G KHDRBS2 KH RNA binding domain containing, signal transduction associated 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:12,522,386...13,150,784
Ensembl chr17:12,522,531...12,898,201 		JBrowse link
G KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:129,814,228...130,044,479
Ensembl chr 8:129,911,686...130,035,258 		JBrowse link
G KHSRP KH-type splicing regulatory protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:6,018,399...6,029,807
Ensembl chr 6:6,018,195...6,029,888 		JBrowse link
G LOC103221203 RNA-binding protein 4 involved_in
acts_upstream_of_or_within		 ISO (PMID:12628928), (PMID:16260624), (PMID:16777844), (PMID:16934801), (PMID:21518792)
(PMID:23129807)		 UniProt
MGI		 PMID:12628928 PMID:16260624 PMID:16777844 PMID:16934801 PMID:21518792 More... NCBI chr 1:7,604,440...7,638,536 JBrowse link
G LOC103239432 myoblast determination protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9525963) Ensembl
MGI		 PMID:9525963 GO_REF:0000107 NCBI chr 1:47,250,927...47,254,572
Ensembl chr 1:47,251,551...47,253,284 		JBrowse link
G LOC103245886 heterogeneous nuclear ribonucleoprotein A1-like involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:47,513,308...47,515,651 JBrowse link
G LOC119622192 heterogeneous nuclear ribonucleoprotein A1-like involved_in IEA Ensembl GO_REF:0000107
G MAGOH mago homolog, exon junction complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:79,685,884...79,697,583
Ensembl chr20:79,685,950...79,698,129 		JBrowse link
G MBNL1 muscleblind like splicing regulator 1 involved_in ISO PMID:31283468 UniProt PMID:31283468 RGD:243049249 NCBI chr15:38,208,694...38,427,867
Ensembl chr15:38,208,038...38,375,273 		JBrowse link
G MBNL2 muscleblind like splicing regulator 2 involved_in
acts_upstream_of_or_within		 ISO PMID:31283468
(PMID:19720736)		 UniProt
MGI		 PMID:19720736 PMID:31283468 RGD:243049249 NCBI chr 3:75,936,438...76,108,163
Ensembl chr 3:75,987,751...76,109,519 		JBrowse link
G NOVA1 NOVA alternative splicing regulator 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:3,363,652...3,513,901
Ensembl chr24:3,360,831...3,514,435 		JBrowse link
G NOVA2 NOVA alternative splicing regulator 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:39,390,384...39,428,290
Ensembl chr 6:39,393,868...39,428,272 		JBrowse link
G NSRP1 nuclear speckle splicing regulatory protein 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr16:23,852,744...23,919,101
Ensembl chr16:23,852,981...23,918,783 		JBrowse link
G PTBP1 polypyrimidine tract binding protein 1 involved_in ISO (PMID:16260624), (PMID:21518792) UniProt PMID:16260624 PMID:21518792 NCBI chr 6:546,010...560,086
Ensembl chr 6:545,964...562,630 		JBrowse link
G PUF60 poly(U) binding splicing factor 60 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 8:138,034,526...138,047,485
Ensembl chr 8:138,034,395...138,042,468 		JBrowse link
G RBFOX1 RNA binding fox-1 homolog 1 acts_upstream_of_or_within ISO (PMID:23300487) MGI PMID:23300487 NCBI chr 5:4,896,225...7,365,137 JBrowse link
G RBFOX1 RNA binding fox-1 homolog 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 Ensembl chr 5:7,163,079...7,365,171 JBrowse link
G RBFOX2 RNA binding fox-1 homolog 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 Atp2b1, Mef2a
(PMID:22357600)
Cacna1c
Fxr1, Mef2a, Mtmr3
Mcl1		 RGD
MGI
TreeGrafter
InterPro		 PMID:22357600 PMID:27239029 PMID:28993448 PMID:31778749 PMID:35641779 GO_REF:0000002 GO_REF:0000118 RGD:329845872 RGD:329845873 RGD:329845874 RGD:329848961 NCBI chr19:18,507,184...18,801,535 JBrowse link
G RBFOX3 RNA binding fox-1 homolog 3 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr16:71,058,257...71,673,053
Ensembl chr16:71,058,131...71,276,475 		JBrowse link
G RBM11 RNA binding motif protein 11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21984414) MGI
TreeGrafter		 PMID:21984414 GO_REF:0000118 NCBI chr 2:78,390,304...78,395,739 JBrowse link
G RBM15 RNA binding motif protein 15 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:23,191,916...23,200,626
Ensembl chr20:23,193,349...23,199,524 		JBrowse link
G RBM15B RNA binding motif protein 15B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:12,732,260...12,735,401
Ensembl chr22:12,732,396...12,735,068 		JBrowse link
G RBM20 RNA binding motif protein 20 involved_in ISO PMID:33805770
PMID:27289039		 UniProt PMID:27289039 PMID:33805770 RGD:152995553 RGD:152995577 NCBI chr 9:103,583,722...103,775,391
Ensembl chr 9:103,703,569...103,777,934 		JBrowse link
G RBM24 RNA binding motif protein 24 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:54,853,761...54,865,742
Ensembl chr17:54,853,761...54,866,058 		JBrowse link
G RBM25 RNA binding motif protein 25 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:50,307,718...50,384,087
Ensembl chr24:50,307,790...50,382,521 		JBrowse link
G RBM47 RNA binding motif protein 47 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:9,683,026...9,888,245
Ensembl chr27:9,873,138...9,888,239 		JBrowse link
G RBM5 RNA binding motif protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:11,473,623...11,505,251
Ensembl chr22:11,473,494...11,507,096 		JBrowse link
G RBM7 RNA binding motif protein 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:105,806,156...105,815,518
Ensembl chr 1:105,806,228...105,816,356 		JBrowse link
G RBM8A RNA binding motif protein 8A involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:12,819,891...12,821,656
Ensembl chr20:12,819,956...12,821,629 		JBrowse link
G RBMX RNA binding motif protein X-linked involved_in ISO (PMID:12165565), (PMID:12761049) UniProt PMID:12165565 PMID:12761049 NCBI chr  X:111,880,859...111,892,660 JBrowse link
G RBMXL1 RBMX like 1 involved_in ISO PMID:19282290 UniProt PMID:19282290 RGD:2316827 NCBI chr20:44,416,179...44,428,807 JBrowse link
G RBPMS RNA binding protein, mRNA processing factor involved_in ISO PMID:37548402 UniProt PMID:37548402 RGD:401901235 NCBI chr 8:28,496,583...28,684,487
Ensembl chr 8:28,496,075...28,659,907 		JBrowse link
G RBPMS2 RNA binding protein, mRNA processing factor 2 involved_in ISO PMID:31283468 UniProt PMID:31283468 RGD:243049249 NCBI chr26:18,810,371...18,847,642 JBrowse link
G REST RE1 silencing transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:11,749,312...11,776,103
Ensembl chr 7:11,749,168...11,773,340 		JBrowse link
G RNPS1 RNA binding protein with serine rich domain 1 involved_in ISO (PMID:22203037) UniProt PMID:22203037 NCBI chr 5:2,148,929...2,163,810 JBrowse link
G SAP18 Sin3A associated protein 18 involved_in ISO (PMID:22203037)
(PMID:20966198)		 UniProt PMID:20966198 PMID:22203037 NCBI chr 3:63,736...72,521
Ensembl chr 3:61,957...72,524 		JBrowse link
G SF3A1 splicing factor 3a subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:13,213,059...13,237,200
Ensembl chr19:13,211,275...13,237,257 		JBrowse link
G SMNDC1 survival motor neuron domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:103,217,216...103,229,422
Ensembl chr 9:103,218,308...103,228,053 		JBrowse link
G SRRM4 serine/arginine repetitive matrix 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23055939) Ensembl
MGI		 PMID:23055939 GO_REF:0000107 NCBI chr11:114,329,529...114,506,944
Ensembl chr11:114,329,733...114,500,732 		JBrowse link
G SRSF12 serine and arginine rich splicing factor 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:13,864,683...13,884,424
Ensembl chr13:13,864,870...13,884,334 		JBrowse link
G SRSF2 serine and arginine rich splicing factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21470964) Ensembl
MGI		 PMID:21470964 GO_REF:0000107 NCBI chr16:44,945,193...44,948,496
Ensembl chr16:44,945,200...44,946,438 		JBrowse link
G SRSF6 serine and arginine rich splicing factor 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23132731) MGI
Ensembl		 PMID:23132731 GO_REF:0000107 NCBI chr 2:20,340,163...20,345,873
Ensembl chr 2:20,342,681...20,346,122 		JBrowse link
G THRAP3 thyroid hormone receptor associated protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:96,552,233...96,631,220
Ensembl chr20:96,552,077...96,599,904 		JBrowse link
G TIA1 TIA1 cytotoxic granule associated RNA binding protein involved_in ISO (MGI:6827199|PMID:11514562), (MGI:6827311|PMID:10938105)
(PMID:14966131), (PMID:17580305)		 UniProt PMID:10938105 PMID:11514562 PMID:14966131 PMID:17580305 MGI:6827199 MGI:6827311 NCBI chr14:36,866,379...36,902,683
Ensembl chr14:36,866,414...36,903,246 		JBrowse link
G TRA2B transformer 2 beta homolog involved_in ISO (PMID:25689357)
(PMID:12165565), (PMID:12761049)		 CAFA
UniProt		 PMID:12165565 PMID:12761049 PMID:25689357 NCBI chr15:3,493,287...3,514,421
Ensembl chr15:3,493,541...3,513,994 		JBrowse link
G WTAP WT1 associated protein involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr13:87,328,228...87,357,868 JBrowse link
G YTHDC1 YTH N6-methyladenosine RNA binding protein C1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29799838) TreeGrafter
MGI		 PMID:29799838 GO_REF:0000118 NCBI chr 7:633,158...670,000
Ensembl chr 7:633,172...671,030 		JBrowse link
G ZBTB7A zinc finger and BTB domain containing 7A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:3,802,171...3,824,552
Ensembl chr 6:3,801,046...3,812,884 		JBrowse link
regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPK heterogeneous nuclear ribonucleoprotein K involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:94,768,403...94,789,957
Ensembl chr12:94,768,480...94,789,743 		JBrowse link
G JMJD6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:44,955,617...44,970,136
Ensembl chr16:44,955,778...44,970,133 		JBrowse link
G KHDRBS1 KH RNA binding domain containing, signal transduction associated 1 involved_in ISO (MGI:5302133|PMID:22196734) UniProt PMID:22196734 MGI:5302133 NCBI chr20:100,831,307...100,859,609
Ensembl chr20:100,832,461...100,859,630 		JBrowse link
G KHDRBS2 KH RNA binding domain containing, signal transduction associated 2 involved_in ISO (MGI:5302133|PMID:22196734) UniProt PMID:22196734 MGI:5302133 NCBI chr17:12,522,386...13,150,784
Ensembl chr17:12,522,531...12,898,201 		JBrowse link
G KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:129,814,228...130,044,479
Ensembl chr 8:129,911,686...130,035,258 		JBrowse link
G LARP7 La ribonucleoprotein 7, transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:60,407,137...60,429,885
Ensembl chr 7:60,406,618...60,430,080 		JBrowse link
G LOC103218670 heterogeneous nuclear ribonucleoprotein K-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:14,500,971...14,502,440 JBrowse link
G LOC103230439 heterogeneous nuclear ribonucleoprotein K-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr25:44,517,612...44,519,703 JBrowse link
G METTL16 methyltransferase 16, RNA N6-adenosine NOT|involved_in ISO
IEA		 (MGI:6114846|PMID:29262316) UniProt
Ensembl		 PMID:29262316 GO_REF:0000107 MGI:6114846 NCBI chr16:2,050,362...2,127,001
Ensembl chr16:2,050,955...2,124,824 		JBrowse link
G QKI QKI, KH domain containing RNA binding involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:91,045,167...91,206,190
Ensembl chr13:91,045,209...91,208,471 		JBrowse link
G RBM20 RNA binding motif protein 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:103,583,722...103,775,391
Ensembl chr 9:103,703,569...103,777,934 		JBrowse link
G RBM23 RNA binding motif protein 23 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr29:23,267,941...23,287,097
Ensembl chr29:23,267,944...23,287,166 		JBrowse link
G RBM39 RNA binding motif protein 39 involved_in ISO (PMID:28302793), (PMID:28437394)
(PMID:15694343)		 UniProt PMID:15694343 PMID:28302793 PMID:28437394 NCBI chr 2:56,621,692...56,645,028
Ensembl chr 2:56,622,562...56,644,921 		JBrowse link
G SF1 splicing factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:9,456,524...9,470,920
Ensembl chr 1:9,456,971...9,472,396 		JBrowse link
G SON SON DNA and RNA binding protein involved_in ISO (PMID:21504830) UniProt PMID:21504830 NCBI chr 2:58,610,076...58,643,758 JBrowse link
G SON SON DNA and RNA binding protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr 2:58,610,979...58,634,982 JBrowse link
G SRSF10 serine and arginine rich splicing factor 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:108,713,392...108,728,908
Ensembl chr20:108,721,666...108,722,522 		JBrowse link
G SRSF3 serine and arginine rich splicing factor 3 involved_in ISO (PMID:26876937), (PMID:32440474) UniProt PMID:26876937 PMID:32440474 NCBI chr17:35,535,900...35,544,852 JBrowse link
G TIA1 TIA1 cytotoxic granule associated RNA binding protein involved_in ISO (PMID:11106748), (PMID:7488725) UniProt PMID:7488725 PMID:11106748 NCBI chr14:36,866,379...36,902,683
Ensembl chr14:36,866,414...36,903,246 		JBrowse link
G YTHDC1 YTH N6-methyladenosine RNA binding protein C1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:633,158...670,000
Ensembl chr 7:633,172...671,030 		JBrowse link
spliceosomal complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRNKL1 crooked neck pre-mRNA splicing factor 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:49,052,304...49,070,600
Ensembl chr 2:49,054,125...49,070,576 		JBrowse link
G DDX39B DExD-box helicase 39B involved_in ISO (PMID:18593880) BHF-UCL PMID:18593880 NCBI chr17:40,445,258...40,457,379
Ensembl chr17:40,447,061...40,456,826 		JBrowse link
G GCFC2 GC-rich sequence DNA-binding factor 2 involved_in ISO (PMID:24304693) UniProt PMID:24304693 NCBI chr14:31,524,958...31,571,978
Ensembl chr14:31,525,483...31,573,928 		JBrowse link
G GEMIN6 gem nuclear organelle associated protein 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr14:68,599,432...68,605,014
Ensembl chr14:68,599,359...68,604,988 		JBrowse link
G LOC103244341 putative U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:16,168,292...16,181,609 JBrowse link
G LOC119625694 gem-associated protein 2-like involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104
G NCBP1 nuclear cap binding protein subunit 1 involved_in ISO (PMID:23793891) CAFA PMID:23793891 NCBI chr12:41,736,063...41,776,178
Ensembl chr12:41,738,579...41,776,509 		JBrowse link
G PRPF19 pre-mRNA processing factor 19 involved_in ISO (PMID:16332694) BHF-UCL PMID:16332694 NCBI chr 1:12,942,238...12,958,853
Ensembl chr 1:12,942,213...12,959,947 		JBrowse link
G RBM5 RNA binding motif protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:11,473,623...11,505,251
Ensembl chr22:11,473,494...11,507,096 		JBrowse link
G RSRP1 arginine and serine rich protein 1 involved_in ISO (PMID:34042961) UniProt PMID:34042961 NCBI chr20:107,454,761...107,460,356
Ensembl chr20:107,455,194...107,460,062 		JBrowse link
G SCAF11 SR-related CTD associated factor 11 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:42,132,550...42,209,387
Ensembl chr11:42,129,779...42,209,402 		JBrowse link
G SF3A2 splicing factor 3a subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:2,034,892...2,047,653
Ensembl chr 6:2,041,384...2,047,542 		JBrowse link
G SF3B1 splicing factor 3b subunit 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr10:82,901,908...82,952,094
Ensembl chr10:82,899,079...82,952,071 		JBrowse link
G SRPK1 SRSF protein kinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:36,196,763...36,287,166
Ensembl chr17:36,196,898...36,284,900 		JBrowse link
G SRPK2 SRSF protein kinase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:74,032,668...74,312,887
Ensembl chr21:74,034,136...74,201,243 		JBrowse link
G SRPK3 SRSF protein kinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:128,207,636...128,212,624
Ensembl chr  X:128,207,989...128,212,410 		JBrowse link
G USP39 ubiquitin specific peptidase 39 involved_in IEA InterPro GO_REF:0000002 NCBI chr14:21,507,666...21,554,819
Ensembl chr14:21,508,104...21,541,553 		JBrowse link
G ZRSR2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:14,247,231...14,279,466
Ensembl chr  X:14,247,287...14,279,448 		JBrowse link
spliceosomal complex disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHX8 DEAH-box helicase 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:62,887,115...62,925,119
Ensembl chr16:62,887,594...62,925,061 		JBrowse link
G DNAJC17 DnaJ heat shock protein family (Hsp40) member C17 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:42,193,826...42,238,883
Ensembl chr26:42,193,852...42,238,811 		JBrowse link
G TFIP11 tuftelin interacting protein 11 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr19:9,396,221...9,416,478
Ensembl chr19:9,396,298...9,416,476 		JBrowse link
spliceosomal snRNP assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLNS1A chloride nucleotide-sensitive channel 1A involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 1:68,830,943...68,853,490
Ensembl chr 1:68,834,327...68,853,492 		JBrowse link
G COIL coilin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:36,450,064...36,473,294
Ensembl chr16:36,450,102...36,469,493 		JBrowse link
G DDX20 DEAD-box helicase 20 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:21,842,398...21,869,247
Ensembl chr20:21,839,223...21,853,601 		JBrowse link
G GEMIN2 gem nuclear organelle associated protein 2 involved_in ISO (PMID:18984161), (PMID:31799625)
(PMID:12067652)		 UniProt
ComplexPortal		 PMID:12067652 PMID:18984161 PMID:31799625 NCBI chr24:15,886,441...15,909,137 JBrowse link
G GEMIN4 gem nuclear organelle associated protein 4 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr16:494,882...501,634
Ensembl chr16:490,523...501,594 		JBrowse link
G GEMIN5 gem nuclear organelle associated protein 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr23:57,333,907...57,383,814
Ensembl chr23:57,332,805...57,383,802 		JBrowse link
G GEMIN6 gem nuclear organelle associated protein 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:68,599,432...68,605,014
Ensembl chr14:68,599,359...68,604,988 		JBrowse link
G GEMIN7 gem nuclear organelle associated protein 7 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:38,535,684...38,550,234
Ensembl chr 6:38,549,431...38,549,826 		JBrowse link
G GEMIN8 gem nuclear organelle associated protein 8 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr  X:12,492,827...12,513,893 JBrowse link
G LOC103224264 gem-associated protein 8 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 4:82,161,315...82,162,534 JBrowse link
G LOC103244060 small nuclear ribonucleoprotein E involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr 2:10,300,066...10,300,572 JBrowse link
G LOC119625694 gem-associated protein 2-like involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118
G LOC119627169 small nuclear ribonucleoprotein G-like involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104
G LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:16,783,566...16,800,116
Ensembl chr 6:16,782,746...16,800,143 		JBrowse link
G PRMT5 protein arginine methyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:23,288,458...23,297,746
Ensembl chr29:23,288,835...23,297,518 		JBrowse link
G PRMT7 protein arginine methyltransferase 7 involved_in IEA UniProt GO_REF:0000104 NCBI chr 5:59,058,827...59,106,177
Ensembl chr 5:59,058,846...59,106,106 		JBrowse link
G PRP4K pre-mRNA processing factor kinase PRP4K involved_in ISO (PMID:12077342) UniProt PMID:12077342 NCBI chr17:68,110,544...68,153,939
Ensembl chr17:68,114,973...68,153,844 		JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein NOT|involved_in ISO (PMID:15314151)
(PMID:14749385), (PMID:15314151)		 UniProt PMID:14749385 PMID:15314151 NCBI chr11:103,716,517...103,752,087
Ensembl chr11:103,715,292...103,751,874 		JBrowse link
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:54,064,240...54,073,341
Ensembl chr 2:54,063,999...54,073,367 		JBrowse link
G SNRPC small nuclear ribonucleoprotein polypeptide C involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr17:37,332,697...37,348,968
Ensembl chr17:37,332,687...37,349,133 		JBrowse link
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide involved_in IEA UniProt
TreeGrafter
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr18:58,860,447...58,876,216
Ensembl chr18:58,858,822...58,876,198 		JBrowse link
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:39,127,974...39,134,771
Ensembl chr 6:39,127,877...39,134,626 		JBrowse link
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide involved_in IEA Ensembl
TreeGrafter
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr19:7,560,946...7,577,338
Ensembl chr19:7,417,483...7,577,914 		JBrowse link
G SNRPE small nuclear ribonucleoprotein polypeptide E involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr25:25,474,620...25,483,427 JBrowse link
G SNRPF small nuclear ribonucleoprotein polypeptide F involved_in ISO (PMID:18984161) UniProt PMID:18984161 NCBI chr11:91,244,619...91,251,805 JBrowse link
G SNRPF small nuclear ribonucleoprotein polypeptide F involved_in IEA InterPro GO_REF:0000002 Ensembl chr11:91,244,648...91,251,733 JBrowse link
G SNRPG small nuclear ribonucleoprotein polypeptide G involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr14:36,823,959...36,858,240
Ensembl chr14:36,826,779...36,837,137 		JBrowse link
G STRAP serine/threonine kinase receptor associated protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:15,790,449...15,812,964
Ensembl chr11:15,790,798...15,813,585 		JBrowse link
G TDRD6 tudor domain containing 6 involved_in ISO (MGI:5904379|PMID:28263986) CACAO PMID:28263986 MGI:5904379 NCBI chr17:25,573,189...25,588,368
Ensembl chr17:25,573,730...25,587,052 		JBrowse link
G TSSC4 tumor suppressing subtransferable candidate 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:2,215,375...2,218,808 JBrowse link
spliceosomal tri-snRNP complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AAR2 AAR2 splicing factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:57,088,636...57,117,591
Ensembl chr 2:57,088,513...57,110,407 		JBrowse link
G LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10523320) MGI
Ensembl		 PMID:10523320 GO_REF:0000107 NCBI chr17:40,214,726...40,226,753
Ensembl chr17:40,214,771...40,226,545 		JBrowse link
G PRP4K pre-mRNA processing factor kinase PRP4K involved_in ISO (PMID:20118938) UniProt PMID:20118938 NCBI chr17:68,110,544...68,153,939
Ensembl chr17:68,114,973...68,153,844 		JBrowse link
G PRPF19 pre-mRNA processing factor 19 involved_in ISO (PMID:20595234) UniProt PMID:20595234 NCBI chr 1:12,942,238...12,958,853
Ensembl chr 1:12,942,213...12,959,947 		JBrowse link
G PRPF3 pre-mRNA processing factor 3 involved_in ISO (PMID:20595234) UniProt PMID:20595234
G PRPF31 pre-mRNA processing factor 31 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11867543) MGI
InterPro		 PMID:11867543 GO_REF:0000002 NCBI chr 6:46,790,193...46,808,946
Ensembl chr 6:46,793,455...46,808,948 		JBrowse link
G PRPF6 pre-mRNA processing factor 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:211,482...259,590
Ensembl chr 2:211,604...259,447 		JBrowse link
G PRPF8 pre-mRNA processing factor 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:1,321,568...1,352,775
Ensembl chr16:1,321,416...1,352,466 		JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:12032085), (PMID:20595234) UniProt PMID:12032085 PMID:20595234 NCBI chr11:103,716,517...103,752,087
Ensembl chr11:103,715,292...103,751,874 		JBrowse link
G TSSC4 tumor suppressing subtransferable candidate 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:2,215,375...2,218,808 JBrowse link
G USP4 ubiquitin specific peptidase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:10,672,920...10,735,374
Ensembl chr22:10,672,388...10,732,104 		JBrowse link
spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 involved_in ISO (PMID:35241646) UniProt PMID:35241646 NCBI chr14:693,873...724,226
Ensembl chr14:694,126...724,208 		JBrowse link
U2-type prespliceosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX42 DEAD-box helicase 42 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:57,470,095...57,517,056
Ensembl chr16:57,471,015...57,504,239 		JBrowse link
G DDX46 DEAD-box helicase 46 involved_in ISO (PMID:36797247) UniProt PMID:36797247 NCBI chr23:37,547,227...37,613,632 JBrowse link
G HTATSF1 HIV-1 Tat specific factor 1 involved_in ISO (PMID:32494006), (PMID:34822310) UniProt PMID:32494006 PMID:34822310 NCBI chr  X:111,498,102...111,513,959
Ensembl chr  X:111,498,634...111,514,749 		JBrowse link
G SF3A1 splicing factor 3a subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:13,213,059...13,237,200
Ensembl chr19:13,211,275...13,237,257 		JBrowse link
G SF3A2 splicing factor 3a subunit 2 involved_in ISO (PMID:11533230) UniProt PMID:11533230 NCBI chr 6:2,034,892...2,047,653
Ensembl chr 6:2,041,384...2,047,542 		JBrowse link
G SF3A3 splicing factor 3a subunit 3 involved_in ISO (PMID:11533230) UniProt PMID:11533230 NCBI chr20:94,880,104...94,907,656
Ensembl chr20:94,880,059...94,909,069 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16925
    metabolic process 10515
      primary metabolic process 9206
        RNA processing 894
          mRNA processing 406
            mRNA splicing, via spliceosome 306
              alternative mRNA splicing, via spliceosome + 79
              mRNA cis splicing, via spliceosome + 28
              mRNA trans splicing, via spliceosome + 0
              negative regulation of mRNA splicing, via spliceosome + 25
              positive regulation of mRNA splicing, via spliceosome + 31
              regulation of mRNA splicing, via spliceosome + 120
              spliceosomal complex assembly + 51
              spliceosomal complex disassembly 3
              spliceosomal conformational changes to generate catalytic conformation + 5
              spliceosomal snRNP assembly + 38
              spliceosome-depend formation of circular RNA 0
Path 2
Term Annotations click to browse term
  biological_process 16925
    metabolic process 10515
      biosynthetic process 7469
        organic substance biosynthetic process 7403
          organic cyclic compound biosynthetic process 4534
            nucleobase-containing compound biosynthetic process 4310
              nucleic acid biosynthetic process 4069
                RNA biosynthetic process 3964
                  RNA processing 894
                    RNA splicing 389
                      RNA splicing, via transesterification reactions 306
                        RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 306
                          mRNA splicing, via spliceosome 306
                            alternative mRNA splicing, via spliceosome + 79
                            mRNA cis splicing, via spliceosome + 28
                            mRNA trans splicing, via spliceosome + 0
                            negative regulation of mRNA splicing, via spliceosome + 25
                            positive regulation of mRNA splicing, via spliceosome + 31
                            regulation of mRNA splicing, via spliceosome + 120
                            spliceosomal complex assembly + 51
                            spliceosomal complex disassembly 3
                            spliceosomal conformational changes to generate catalytic conformation + 5
                            spliceosomal snRNP assembly + 38
                            spliceosome-depend formation of circular RNA 0
paths to the root